Select samples or controls to set up an analysis

The Projects page is the starting point for the sample selection method of analysis setup.

Choose this workflow when you have more than one plate whose samples you want to analyze in a single analysis. See Analyze selected samples.

You can use this workflow also to analyze controls only. See Analyze controls only.

For this workflow, PAS must already contain the applicable plate and MS data files in a project. Additionally, if you plan to use the Proteogenomics analysis protocol to analyze samples, you must have already defined associations between the samples and VCF files. See VCF files.

The Projects page Sample list area

  1. Project name

  2. Number of selected samples

  3. Analyze button with options