Set preferences for the Sample Group UpSet Plots graph

You can temporarily customize the appearance of the Sample Group UpSet Plots graph.

1. Open the Analysis Results tab. (See View Analysis Results.)

2. If needed, scroll down to the Graphs section. Then select the Sample Group UpSet Plots tab.

3. Select  Settings on the graph to open the Preferences dialog.

4. Adjust the settings as you prefer.

   • Horizontal Bar Position — Select an orientation for the graph.

     • Left — The graph is positioned left.

     • Right — The graph is positioned right.

     • None — The graph is hidden.

   • Vertical Height Rate — Enter a value for the relative bar height in the graph.

   • MS file’s name length — Enter the character limit for the MS data file name.

   • Display Top N Intersection — Select which bars appear on the graph.

     • All — Shows intersection sizes for all samples.

     • 4 — Shows the intersection sizes of the top four largest samples only.

     • 8 — Shows the intersection sizes of the top eight largest samples only.

     • 16 — Shows the intersection sizes of the top 16 largest samples only.

     • 32 — Shows the intersection sizes of the top 32 largest samples only.

   • Display Percentage — Select to show percentages on top of each bar in the Intersection Size graph.

   • Page Chart Layout — Select an option for how many graphs appear on a page and the layout. For example, the 2 × 2 option shows four graphs per page, two down and two across.

     By default, this section consolidates information for all samples into two bar graphs and a matrix for easy comparison. You can divide these elements into graphs for individual samples and change the page layout accordingly.

   • <colors> — Set colors for the various parts of the graph, such as for the vertical and horizontal bars. Use the techniques in Set color preferences in analysis results graphs.

5. Select Continue to apply the settings.