VCF Files page

Use the VCF Files page to manage the associations of samples with variant call files (VCF) that you upload to PAS. Each table item represents the association of one sample with one or more VCF files. When you use a Proteogenomics analysis protocol to analyze samples, PAS shows these associations in a list.

To open this page, expand  Data Files on the sidebar menu and select VCF Files.

Toolbar items

• Add Sample VCF — Use to add a new association between a sample and VCF files. See Add a new association between a sample and one or more VCF files.

• Select Space — Select a specific Space by which to filter table items. See Filter a table.

•  Batch Upload — Use to upload multiple VCF files to PAS, making them available for association with samples. See Upload a batch of VCF files to PAS.

Table columns

• Sample Name — The name of a sample with which one or more VCF files are associated.

  • To remove the association of the VCF file(s) to this sample, select  Delete Sample immediately to the right of the sample name. See Remove the association of a sample to VCF files.

• Space — The Space to which the VCF file belongs.

• VCF File Name — The file names of the .vcf or .vcf.gz files associated with the sample. The primary VCF file for the sample is indicated by the selected checkbox .

• Uploaded By — The name of the user who uploaded a VCF file.

• Time — The date and time a VCF file was uploaded.

•  Delete VCF Files — Select to delete the selected VCF file from PAS. See Delete VCF files from PAS.