PPI Network graph

You can view thePPI Network graph for a completed group analysis.

Here you can visualize a network plot showing protein-protein interactions between proteins with significant differences between groups compared.

PPI Network graph

How to open and use

  • To open after running a group analysis, select PPI Network on the Group Analysis toolbar.

  • To adjust the confidence of the Minimum Interaction Score, select Settings (gear) button Settings on the graph.

  • Nodes in the graph are selectable to view protein description and can be moved around.

  • In the table at the left of the graph, use columns’ Filter option to show only values that are greater than, less than, greater than or equal to, or less than or equal to the value you specify or are between two values you specify. To apply the filter, select . To clear it, select .

    Filtering data this way offers you more control over what appears in the graph, particularly if you want to export different versions of it.